Mem Inst Oswaldo Cruz, Rio de Janeiro, VOLUME 121 | 2026
Research Articles

Extracellular vesicles isolated from the plasma of COVID-19 and sepsis patients: characterisation and association with clinical outcomes

Jaques Franco Novaes de Carvalho1, Paula Meneghetti2, Gabriela Rodrigues Barbosa1, Marina Malheiros Araújo Silvestrini3, Sidneia Sousa Santos1, Flávio Geraldo Freitas4, Daniela Boschetti4, Nancy Cristina Junqueira Bellei1, Andréa Teixeira de Carvalho3, Ana Claudia Torrecilhas2,+, Reinaldo Salomao1,+

1Universidade Federal de São Paulo, Infectologia da Escola Paulista de Medicina, São Paulo, SP, Brasil
2Universidade Federal de São Paulo, Instituto de Ciências Ambientais, Químicas e Farmacêuticas, Departamento de Ciências Farmacêuticas, Laboratório de Imunologia Celular e Bioquímica de Fungos e Protozoários, Diadema, SP, Brasil
3Fundação Oswaldo Cruz-Fiocruz, Instituto René Rachou, Belo Horizonte, MG, Brasil
4Hospital Sepaco, São Paulo, SP, Brasil

DOI: 10.1590/0074-02760250109
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ABSTRACT

BACKGROUND Extracellular vesicles (EVs) are involved in the pathogenesis of severe acute respiratory syndrome Coronavirus 2 (SARS-CoV-2) infection.
OBJECTIVES We analysed the concentration, size, cellular origin, and capacity for carrying viral components in plasma samples from patients with Coronavirus disease 2019 (COVID-19) and sepsis.
METHODS Plasma samples from COVID-19 patients admitted to the intensive care unit (ICU) with sepsis (N = 42) and healthy individuals (N = 19) were analysed. EVs were characterised by size and concentration using nanoparticle tracking analysis (NTA), polymerase chain reaction (RT-qPCR) for SARS-CoV-2 components, and flow cytometry for immunophenotyping. EVs were marked with phosphatidylserine and tetraspanins. Cellular origin markers were used for neutrophils, endothelial cells, T lymphocytes and platelets. Cryo-EM was used to assess EV size and integrity.
FINDINGS NTA showed an increased concentration of microparticles in patients. RT-qPCR analysis of EVs detected the virus in 14 samples, two of which were consistent with the Gamma variant. EVs predominantly derived from T cells and platelets and demonstrated an increased expression of CD81 in individuals who died. Cryo-EM revealed EVs with an average size of 200 nm.
MAIN CONCLUSIONS Our findings suggest that patients’ EVs likely harboured viral components, suggesting their potential role as carriers of SARS-CoV-2. In addition, EVs from deceased patients demonstrated elevated levels of CD81 expression.

REFERENCES
01. Tay MZ, Poh CM, Rénia L, MacAry PA, Ng LFP. The trinity of COVID-19: immunity, inflammation and intervention. Nat Rev Immunol. 2020; 20(6): 363-74.
02. Chan JFW, Kok KH, Zhu Z, Chu H, To KK-W, Yuan S, et al. Genomic characterization of the 2019 novel human-pathogenic coronavirus isolated from a patient with atypical pneumonia after visiting Wuhan. Emerg Microbes Infect. 2020; 9(1): 221-36.
03. Colombo M, Raposo G, Théry C. Biogenesis, secretion, and intercellular interactions of exosomes and other extracellular vesicles. Annu Rev Cell Dev Biol. 2014; 30: 255-89.
04. Madeira RP, Romera LMDM, Buck PC, Mady C, Ianni BM, Torrecilhas AC. New biomarker in Chagas disease: extracellular vesicles isolated from peripheral blood in chronic Chagas disease patients modulate the human immune response. J Immunol Res. 2021; 2021: 6650670.
05. Fernandez-Becerra C, Xander P, Alfandari D, Don G, Aparici- Herraiz I, Rosenhek-Goldian I. Guidelines for the purification and characterization of extracellular vesicles of parasites. J Extracell Biol. 2022; 2(10): e117.
06. Lötvall J, Hill AF, Hochberg F, Buzás EI, Di Vizio D, Gardiner C, et al. Minimal experimental requirements for definition of extracellular vesicles and their functions: a position statement from the International Society for Extracellular Vesicles. J Extracell Vesicles. 2014; 3(1): 26913.
07. Zhang H, Freitas D, Kim HS, Fabijanic K, Li Z, Chen H, et al. Identification of distinct nanoparticles and subsets of extracellular vesicles by asymmetric flow field-flow fractionation. Nat Cell Biol. 2018; 20(3): 332-43.
08. Raposo G, Stoorvogel W. Extracellular vesicles: exosomes, microvesicles, and friends. J Cell Biol. 2013; 200(4): 373-83.
09. Battistelli M, Falcieri E. Apoptotic bodies: particular extracellular vesicles involved in intercellular communication. Biology (Basel). 2020; 9(1): 21.
10. Krishnamachary B, Cook C, Kumar A, Spikes L, Chalise P, Dhillon NK. Extracellular vesicle-mediated endothelial apoptosis and EV-associated proteins correlate with COVID-19 disease severity. J Extracell Vesicles. 2021; 10(9): e12117.
11. Lenassi M, Cagney G, Liao M, Vaupotič T, Bartholomeeusen K, Cheng Y, et al. HIV Nef is secreted in exosomes and triggers apoptosis in bystander CD4+ T cells. Traffic. 2010; 11(1): 110-22.
12. Qian Z, Travanty EA, Oko L, Edeen K, Berglund A, Wang J, et al. Innate immune response of human alveolar type II cells infected with severe acute respiratory syndrome-coronavirus. Am J Respir Cell Mol Biol. 2013; 48(6): 742-8.
13. Pironti G, Andersson DC, Lund LH. Mechanistic and therapeutic implications of extracellular vesicles as a potential link between COVID-19 and cardiovascular disease manifestations. Front Cell Dev Biol. 2021; 9: 640723.
14. Dittmayer C, Meinhardt J, Radbruch H, Radke J, Heppner BI, Heppner FL, et al. Why misinterpretation of electron micrographs in SARS-CoV-2 infected tissue goes viral. Lancet. 2020; 396(10260): e64-5.
15. Kwon Y, Nukala SB, Srivastava S, Miyamoto H, Ismail NI, Jousma J, et al. Detection of viral RNA fragments in human iPSC cardiomyocytes following treatment with extracellular vesicles from SARS-CoV-2 coding sequence overexpressing lung epithelial cells. Stem Cell Res Ther. 2020; 11: 514.
16. WHO - World Health Organization. Clinical management of COVID- 19: interim guidance. Geneva: World Health Organization; 2020 [cited 2024 Apr 12]. Available from: https://apps.who.int/ iris/handle/10665/332196.
17. Salomão R, Cunha FQ, Dal-Pizzol F. Editorial: sepsis and COVID- 19: cross-talk in signaling pathways and in therapeutic perspectives. Front Med (Lausanne). 2022; 9: 917792.
18. Singer M, Deutschman CS, Seymour CW, Shankar-Hari M, Annane D, Bauer M, et al. The Third International Consensus Definitions for Sepsis and Septic Shock (Sepsis-3). JAMA. 2016; 315(8): 801-10.
19. Magalhães LP. Profile of circulating microvesicles as a prognostic factor in severe COVID-19 [MsD Thesis]. Belo Horizonte: Fundação Oswaldo Cruz - Instituto René Rachou; 2022.
20. Puga ML, Menegueti MG, Silvestrini MMA, Santos LJS, Ferreira- Nogueira R, Basile-Filho A, et al. Performance of microvesicles as biomarkers of clinical outcome in sepsis and trauma: a pilot study. Biomed Pharmacother. 2022; 146: 112490.
21. Arraud N, Linares R, Tan S, Gounou C, Pasquet JM, Mornet S, et al. Extracellular vesicles from blood plasma: determination of their morphology, size, phenotype and concentration. J Thromb Haemost. 2014; 12(5): 614-27.
22. Théry C, Witwer KW, Aikawa E, Alcaraz MJ, Anderson D, Andriantsitohaina R, et al. Minimal information for studies of extracellular vesicles 2018 (MISEV2018): a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines. J Extracell Vesicles. 2018; 7(1): 1535750.
23. Kouwaki T, Okamoto M, Tsukamoto H, Fukushima Y, Oshiumi H. Extracellular vesicles deliver host and virus RNA and regulate innate immune response. Int J Mol Sci. 2017; 18(3): 666.
24. Coline M, Crupi JF, Ilkow CS, Bell JC, Boulton S. Extracellular vesicles and viruses: two intertwined entities. Int J Mol Sci. 2023; 24(2): 1036.
25. Chu DK, Pan Y, Cheng SM, Hui KP, Krishnan P, Liu Y, et al. Molecular diagnosis of a novel Coronavirus (2019-nCoV) causing an outbreak of pneumonia. Clin Chem. 2020; 66(4): 549-55.
26. Tombuloglu H, Sabit H, Al-Khallaf H, Kabanja JH, Alsaeed M, Al-Saleh N, et al. Multiplex real-time RT-PCR method for the diagnosis of SARS-CoV-2 by targeting viral N, RdRP and human RP genes. Sci Rep. 2022; 12: 2853.
27. Johnson BA, Zhou Y, Lokugamage KG, Vu MN, Bopp N, Crocquet- Valdes PA, et al. Nucleocapsid mutations in SARS-CoV-2 augment replication and pathogenesis. PLoS Pathog. 2022; 18(6): e1010627.
28. Wu W, Cheng Y, Zhou H, Sun C, Zhang S. The SARS-CoV-2 nucleocapsid protein: its role in the viral life cycle, structure and functions, and use as a potential target in the development of vaccines and diagnostics. Virol J. 2023; 20(1): 7.
29. Sun R, Cai Y, Zhao Y, Zhu GB, Kong P, Sun J, et al. Proteomic profiling of single extracellular vesicles reveals colocalization of SARS-CoV-2 with a CD81/integrin-rich EV subpopulation in sputum from COVID-19 severe patients. Front Immunol. 2023; 14: 1052141.
30. Bernal C, How-Volkman C, Spencer M, El-Shamy A, Mohieldin AM. The role of extracellular vesicles in SARS-CoV-2-induced acute kidney injury: an overview. Life (Basel). 2024; 14(2): 163.
31. Emelyanov A, Shtam T, Kamyshinsky R, Garaeva L, Verlov N, Miliukhina I, et al. Cryo-electron microscopy of extracellular vesicles from cerebrospinal fluid. PLoS One. 2020; 15(1): e0227949.
32. Zhu N, Zhang D, Wang W, Li X, Yang B, Song J, et al. A novel coronavirus from patients with pneumonia in China, 2019. N Engl J Med. 2020; 382(8): 727-33.
33. Comfort N, Cai K, Bloomquist TR, Strait MD, Ferrante Jr AW, Baccarelli AA. Nanoparticle tracking analysis for the quantification and size determination of extracellular vesicles. J Vis Exp. 2021; (169): e62447.
34. Welsh J, Goberdhan DC, O’Driscoll L, Buzas EI, Blenkiron C, Bussolati B, et al. Minimal information for studies of extracellular vesicles (MISEV2023): from basic to advanced approaches. J Extracell Vesicles. 2024; 13(2): e12404.
35. György B, Szabó TG, Pál Z, Misják P, Aradi B, László V. Membrane vesicles, current state-of-the-art: emerging role of extracellular vesicles. Cell Mol Life Sci. 2011; 68(16): 2667-88.
36. van Niel G, Porto-Carreiro I, Simoes S, Raposo G. Exosomes: a common pathway for a specialized function. J Biochem. 2006; 140(1): 13-21.
37. Andreu Z, Yáñez-Mó M. Tetraspanins in extracellular vesicle formation and function. Front Immunol. 2014; 5: 442.
38. Poveda E, Tabernilla A, Fitzgerald W, Salgado-Barreira Á, Grandal M, Pérez A, et al. Massive release of CD9+ microvesicles in human immunodeficiency virus infection, regardless of virologic control. J Infect Dis. 2022; 225(6): 1040-9.
39. Tan L, Wang Q, Zhang D, Ding J, Huang Q, Tang YQ, et al. Lymphopenia predicts disease severity of COVID-19: a descriptive and predictive study. Signal Transduct Target Ther. 2020; 5: 33.
40. Peçanha-Pietrobom PM, Leite GGF, Hunter J, Ferreira PRA, Burattini MN, Bellei N, et al. The clinical course of hospitalized moderately ill COVID-19 patients is mirrored by routine hematologic tests and influenced by renal transplantation. PLoS One. 2021; 16(11): e0258987.
41. Li P, Wu Y, Goodwin AJ, Wolf B, Halushka PV, Wang H, et al. Circulating extracellular vesicles are associated with the clinical outcomes of sepsis. Front Immunol. 2023; 14: 1150564.
42. Kirian RD, Steinman D, Jewell CM, Zierden HC. Extracellular vesicles as carriers of mRNA: opportunities and challenges in diagnosis and treatment. Theranostics. 2024; 14(5): 2265-89.
43. Yoshida M, Matsuzaki J, Fujita K, Kimura M, Umezu T, Tokuda N, et al. Plasma extracellular vesicle microRNAs reflecting the therapeutic effect of the CBP/β-catenin inhibitor PRI-724 in patients with liver cirrhosis. Sci Rep. 2024; 14(1): 6266.
44. Sharma D, Singh A, Wilson C, Swaroop P, Kumar S, Yadav DK, et al. Exosomal long non-coding RNA MALAT1: a candidate liquid biopsy biomarker for monitoring Wilms’ tumor. Pediatr Surg Int. 2024; 40(1): 57.
45. Kutchy NA, Peeples ES, Sil S, Liao K, Chivero ET, Hu G, et al. Extracellular vesicles in viral infections of the nervous system. Viruses. 2020; 12(7): 700.
46. Sadriddin P, Umida B, Izzat M, Muso U, Jaxongirbek T, Shakhboskhan A, et al. Exosomal non-coding RNA biomarkers in traumatic brain injury. Clin Chim Acta. 2025; 578: 120544.
47. Boucher J, Bazié WW, Goyer B, Alary M, Gilbert C. HIV-1 RNA in large and small plasma extracellular vesicles: a novel parameter for monitoring immune activation and virological failure. J Med Virol. 2025; 97(9): e70574.
48. Federico M. The potential of extracellular vesicle-mediated spread of self-amplifying RNA and a way to mitigate it. Int J Mol Sci. 2025; 26(11): 5118.
49. Cairoli V, Valle-Millares D, Ryan P, Dominguez L, Martín-Carbonero L, De Los Santos I, et al. Extracellular vesicle-derived microRNAs as non-invasive markers of liver fibrosis in chronically infected HCV patients: a pilot study. Noncoding RNA Res. 2025; 12: 132-40.
50. Calderón-Peláez MA, Castellanos JE, Velandia-Romero ML. Extracellular vesicles in ZIKV infection: carriers and facilitators of viral pathogenesis? Sci Prog. 2025; 108(1): 368504241312073.
51. Cai L, Kar P, Liu Y, Chu X, Sharma A, Lee TJ, et al. Plasma extracellular vesicle-derived miR-296-5p is a maturation-dependent rejuvenation factor that downregulates inflammation and improves survival after sepsis. J Extracell Vesicles. 2025; 14(4): e70065.
52. Cao Y, Wang Y, Xiao L, Xu JY, Liu Y, Jiang R, et al. Endothelial- derived exosomes induced by lipopolysaccharide alleviate rat cardiomyocytes injury and apoptosis. Am J Transl Res. 2021; 13(3): 1432-44.

Financial support: FAPESP [Grants 2017/21052-0 and 2020/05110-2 (to RS), Grant 2020/07870-4 (to ACT)].
+ Corresponding authors: ana.torrecilhas@unifesp.br | ORCID https://orcid.org/0000-0001-5724-2199 / rsalomao@unifesp.br | ORCID https://orcid.org/0000-0003-1149-4598
Received 29 April 2025
Accepted 26 September 2025

HOW TO CITE 
de Carvalho JFN, Meneghetti P, Barbosa GR, Silvestrini MMA, Santos SS, Freitas FG, et al. Extracellular vesicles isolated from the plasma of COVID-19 and sepsis patients: characterisation and association with clinical outcomes. Mem Inst Oswaldo Cruz. 2025; 120: e250109.

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