Displaying items by tag: bioinformatics Search for a platelet-activating factor receptor in the Trypanosoma cruzi proteome: a potential target for Chagas disease chemotherapy Daniel Fábio Kawano; Vinicius Barreto da Silva; Daniel Macedo de Melo Jorge; Carlos Henrique Tomich de Paula da Silva; Ivone Carvalho PAGE: 957-967 | DOI: 10.1590/S0074-02762011000800010 Mycobacterium leprae virulence-associated peptides are indicators of exposure to M. leprae in Brazil, Ethiopia and Nepal Kidist Bobosha; Sheila Tuyet Tang; Jolien J van der Ploeg-van Schip; Yonas Bekele; Marcia VSB Martins; Ole Lund; Kees LMC Franken; Saraswoti Khadge; Maria Araci de Andrade Pontes; Heitor de Sá Gonçalves: Jemal Hussien; Pratibha Thapa: Chhatra B Kunwar; Deanna A Hagge; Abraham Aseffa; Maria Cristina Vidal Pessolani; Geraldo MB Pereira; Tom HM Ottenhoff; Annemieke Geluk PAGE: 112-123 | DOI: 10.1590/S0074-02762012000900018 Re-mapping the molecular features of the human immunodeficiency virus type 1 and human T-cell lymphotropic virus type 1 Brazilian sequences using a bioinformatics unit established in Salvador, Bahia, Brazil, to give support to the viral epidemiology Artur Trancoso Lopo de Queiroz ; Aline Cristina Andrade Mota-Miranda; Tulio de Oliveira; Domingos Ramon Moreau; Caroline de Carvalho Urpia; Chandra Mara Carvalho; Bernardo Galvão-Castro; Luiz Carlos Junior Alcantara PAGE: 133-139 | DOI: 10.1590/S0074-02762007005000005 Computational prediction and characterisation of miRNAs and their pathway genes in human schistosomiasis caused by Schistosoma haematobium Thaís Cunha de Sousa Cardoso, Carlos Bruno de Araújo, Laysa Gomes Portilho, Luiz Guilherme Alves Mendes, Tamires Caixeta Alves, Gustavo Caetano Silva, Thales Henrique Cherubino Ribeiro, Peterson Elizandro Gandolfi, Enyara Rezende Morais, Laurence Rodrigues do Amaral, Matheus de Souza Gomes DOI: 10.1590/0074-02760190378 Molecular Modeling Approaches for Determining Gene Function: Application to a Putative Poly-A Binding Protein fromLeishmania amazonensis (LaPABP) FP Silva-Jr, FZ Veyl*, J Clos*, S Giovanni De Simone PAGE: 335-341 Human Genetic Bi-allelic Sequences, HGBASE, a Database of Intra-genic Polymorphisms Chandra Sarkar, Flavio R Ortigão, Ulf Gyllensten, Anthony J Brookes PAGE: 693-694 Clustering of Schistosoma mansoni mRNA Sequences and Analysis of the Most Transcribed Genes: Implications in Metabolism and Biology of Different Developmental Stages Francisco Prosdocimi, Alessandra C Faria-Campos, Fabiano C Peixoto, Sérgio DJ Pena, José M Ortega, Glória R Franco PAGE: 61-69 Draft genome of the Leptospira interrogans strains, Acegua, RCA, Prea, and Capivara, obtained from wildlife maintenance hosts and infected domestic animals Frederico S Kremer, Marcus R Eslabão, Sérgio Jorge, Natasha R Oliveira, Julia Labonde, Monize NP Santos, Leonardo G Monte, André A Grassmann, Carlos EP Cunha, Karine M Forster, Luísa Z Moreno, Andrea M Moreno, Vinicius F Campos, Alan JA McBride, Luciano S Pinto, Odir A Dellagostin PAGE: 280-283 | DOI: 10.1590/0074-02760160010 Genome of Leptospira borgpetersenii strain 4E, a highly virulent isolate obtained from Mus musculus in southern Brazil Marcus Redü Eslabão, Frederico Schmitt Kremer, Rommel Thiago Juca Ramos, Artur Luiz da Costa da Silva, Vasco Ariston de Carvalho Azevedo, Luciano da Silva Pinto, Éverton Fagonde da Silva, Odir Antônio Dellagostin PAGE: 137-141 | DOI: 10.1590/0074-02760170111 Whole-genome sequencing of Leptospira interrogans from southern Brazil: genetic features of a highly virulent strain Sérgio Jorge, Frederico Schmitt Kremer, Natasha Rodrigues de Oliveira, Gabrielle de Oliveira Sanches Valerio Navarro, Amanda Munari Guimarães, Christian Domingues Sanchez, Rafael Danelon dos Santos Woloski, Karine Forster Ridieri, Vinícius Farias Campos, Luciano da Silva Pinto, Odir Antônio Dellagostin PAGE: 80-86 | DOI: 10.1590/0074-02760170130 Genome-wide identification, characterisation and expression profiling of the ubiquitin-proteasome genes in Biomphalaria glabrata Laysa Gomes Portilho, Bruna Custódio Dias Duarte, Fábio Ribeiro Queiroz, Thales Henrique Cherubino Ribeiro, Wander de Jesus Jeremias, Elio Hideo Babá, Paulo Marcos Zech Coelho, Enyara Rezende Morais, Fernanda Janku Cabral, Roberta Lima Caldeira, Matheus de Souza Gomes DOI: 10.1590/0074-02760190052 In silico construction of a multi-epitope vaccine (RGME-VAC/ATS-1) against the Rickettsia genus using immunoinformatics Andrei Giacchetto Felice, Thaís Cristina Vilela Rodrigues, Pedro Henrique Marques, Felipe Lucas Zen, Marcela Rezende Lemes, Rafael Obata Trevisan, Bruno Silva Andrade, Carlo José Freire de Oliveira, Vasco Ariston de Carvalho Azevedo, Sandeep Tiwari, Siomar de Castro Soares DOI: 10.1590/0074-02760240201
Search for a platelet-activating factor receptor in the Trypanosoma cruzi proteome: a potential target for Chagas disease chemotherapy Daniel Fábio Kawano; Vinicius Barreto da Silva; Daniel Macedo de Melo Jorge; Carlos Henrique Tomich de Paula da Silva; Ivone Carvalho PAGE: 957-967 | DOI: 10.1590/S0074-02762011000800010
Mycobacterium leprae virulence-associated peptides are indicators of exposure to M. leprae in Brazil, Ethiopia and Nepal Kidist Bobosha; Sheila Tuyet Tang; Jolien J van der Ploeg-van Schip; Yonas Bekele; Marcia VSB Martins; Ole Lund; Kees LMC Franken; Saraswoti Khadge; Maria Araci de Andrade Pontes; Heitor de Sá Gonçalves: Jemal Hussien; Pratibha Thapa: Chhatra B Kunwar; Deanna A Hagge; Abraham Aseffa; Maria Cristina Vidal Pessolani; Geraldo MB Pereira; Tom HM Ottenhoff; Annemieke Geluk PAGE: 112-123 | DOI: 10.1590/S0074-02762012000900018
Re-mapping the molecular features of the human immunodeficiency virus type 1 and human T-cell lymphotropic virus type 1 Brazilian sequences using a bioinformatics unit established in Salvador, Bahia, Brazil, to give support to the viral epidemiology Artur Trancoso Lopo de Queiroz ; Aline Cristina Andrade Mota-Miranda; Tulio de Oliveira; Domingos Ramon Moreau; Caroline de Carvalho Urpia; Chandra Mara Carvalho; Bernardo Galvão-Castro; Luiz Carlos Junior Alcantara PAGE: 133-139 | DOI: 10.1590/S0074-02762007005000005
Computational prediction and characterisation of miRNAs and their pathway genes in human schistosomiasis caused by Schistosoma haematobium Thaís Cunha de Sousa Cardoso, Carlos Bruno de Araújo, Laysa Gomes Portilho, Luiz Guilherme Alves Mendes, Tamires Caixeta Alves, Gustavo Caetano Silva, Thales Henrique Cherubino Ribeiro, Peterson Elizandro Gandolfi, Enyara Rezende Morais, Laurence Rodrigues do Amaral, Matheus de Souza Gomes DOI: 10.1590/0074-02760190378
Molecular Modeling Approaches for Determining Gene Function: Application to a Putative Poly-A Binding Protein fromLeishmania amazonensis (LaPABP) FP Silva-Jr, FZ Veyl*, J Clos*, S Giovanni De Simone PAGE: 335-341
Human Genetic Bi-allelic Sequences, HGBASE, a Database of Intra-genic Polymorphisms Chandra Sarkar, Flavio R Ortigão, Ulf Gyllensten, Anthony J Brookes PAGE: 693-694
Clustering of Schistosoma mansoni mRNA Sequences and Analysis of the Most Transcribed Genes: Implications in Metabolism and Biology of Different Developmental Stages Francisco Prosdocimi, Alessandra C Faria-Campos, Fabiano C Peixoto, Sérgio DJ Pena, José M Ortega, Glória R Franco PAGE: 61-69
Draft genome of the Leptospira interrogans strains, Acegua, RCA, Prea, and Capivara, obtained from wildlife maintenance hosts and infected domestic animals Frederico S Kremer, Marcus R Eslabão, Sérgio Jorge, Natasha R Oliveira, Julia Labonde, Monize NP Santos, Leonardo G Monte, André A Grassmann, Carlos EP Cunha, Karine M Forster, Luísa Z Moreno, Andrea M Moreno, Vinicius F Campos, Alan JA McBride, Luciano S Pinto, Odir A Dellagostin PAGE: 280-283 | DOI: 10.1590/0074-02760160010
Genome of Leptospira borgpetersenii strain 4E, a highly virulent isolate obtained from Mus musculus in southern Brazil Marcus Redü Eslabão, Frederico Schmitt Kremer, Rommel Thiago Juca Ramos, Artur Luiz da Costa da Silva, Vasco Ariston de Carvalho Azevedo, Luciano da Silva Pinto, Éverton Fagonde da Silva, Odir Antônio Dellagostin PAGE: 137-141 | DOI: 10.1590/0074-02760170111
Whole-genome sequencing of Leptospira interrogans from southern Brazil: genetic features of a highly virulent strain Sérgio Jorge, Frederico Schmitt Kremer, Natasha Rodrigues de Oliveira, Gabrielle de Oliveira Sanches Valerio Navarro, Amanda Munari Guimarães, Christian Domingues Sanchez, Rafael Danelon dos Santos Woloski, Karine Forster Ridieri, Vinícius Farias Campos, Luciano da Silva Pinto, Odir Antônio Dellagostin PAGE: 80-86 | DOI: 10.1590/0074-02760170130
Genome-wide identification, characterisation and expression profiling of the ubiquitin-proteasome genes in Biomphalaria glabrata Laysa Gomes Portilho, Bruna Custódio Dias Duarte, Fábio Ribeiro Queiroz, Thales Henrique Cherubino Ribeiro, Wander de Jesus Jeremias, Elio Hideo Babá, Paulo Marcos Zech Coelho, Enyara Rezende Morais, Fernanda Janku Cabral, Roberta Lima Caldeira, Matheus de Souza Gomes DOI: 10.1590/0074-02760190052
In silico construction of a multi-epitope vaccine (RGME-VAC/ATS-1) against the Rickettsia genus using immunoinformatics Andrei Giacchetto Felice, Thaís Cristina Vilela Rodrigues, Pedro Henrique Marques, Felipe Lucas Zen, Marcela Rezende Lemes, Rafael Obata Trevisan, Bruno Silva Andrade, Carlo José Freire de Oliveira, Vasco Ariston de Carvalho Azevedo, Sandeep Tiwari, Siomar de Castro Soares DOI: 10.1590/0074-02760240201